Viewer3D

version 12.1.0.0 (9.49 MB) by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI

4.8

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Updated15 Sep 2016

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Editor's Note:Popular File2016

This function can be used to interactively view any kind of 2D,3D and 4D image volumes like CT and MRI. Allowing segmentation and distance measurements or ROI selection in 2D slices.
It includes Maximum intensity projections (MIP), Volume Rendering (VR) , Slice render, and colored and Phong shaded Volume rendering.
Voxel opacity and color tables can be changed on the fly allowing also iso surface kind of renders.
The fast render algorithm which renders a 3D volume to a 2D image, is based on a Matlab coded implementation of the Shear-Warp transform, in which instead of rotating the viewer rays the slices are sheared.
There are two major Matlab files:
- viewer3d.m : The interactive GUI
——渲染。m:呈现dat体积的函数a with the shear-warp transform to an 2D image.

File-formats supported:
Matlab Files (.mat)
Dicom Files ( .dcm , .dicom )
V3D Philips Scanner ( .v3d )
GIPL Guys Image Processing Lab ( .gipl )
HDR/IMG Analyze ( .hdr )
ISI Files ( .isi )
NifTi ( .nii )
RAW files ( .raw , .* )
VMP BrainVoyager ( .vmp )
XIF HDllab/ATL ultrasound ( .xif )
VTK Visualization Toolkit ( .vtk )
Insight Meta-Image ( .mha, .mhd )
Micro CT ( .vff )

Note:
This version is 100% Matlab code, but to make it faster if you run "compile c-code" in the config menu. I also included an older version with the shearwarp algorithm in c-code / mex-code

Please report bugs, successes and if you know some possible code speedups.

Cite As

Dirk-Jan Kroon (2022).Viewer3D(//www.tianjin-qmedu.com/matlabcentral/fileexchange/21993-viewer3d), MATLAB Central File Exchange. RetrievedApril 25, 2022.

MATLAB发行有限公司mpatibility

Created with R2015a

Compatible with any release

Platform Compatibility

Windows macOS Linux

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Acknowledgements

Inspired:pcolor3,max_in_place - example of multi-threaded MEX function,Microscopy Image Browser (MIB),Microscopy Image Browser 2 (MIB2)

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Download	15 Sep 2016	12.1.0.0	Fixed mouse-position bug in R2015a
Download	15 Sep 2016	12.0.0.0	Now works with new Matlab versions such as R2015a. Thank you, "Zhensen Chen" for pointing out the UIpanel issue. Now also works without Image-Processing Toolbox
Download	25 Jan 2011	1.26.0.0	Added 4D support, color overlay and many other changes.
Download	12 Jan 2011	1.24.0.0	Major update : Added multiple window and multiple volume support.
Download	19 Nov 2010	1.22.0.0	Fixed Bug number of input arguments slice view, and fixed bug in window-level slider
Download	10 Nov 2010	1.21.0.0	Replaced the c-code Affine Warp files. Now scaling is not longer always 0..1 but supports scales and units like Hounsfield
Download	22 Jul 2010	1.19.0.0	Updated File-formats
Download	6 Jul 2010	1.18.0.0	Fixed folder location compile_c_files, changed text in code from dicom to data3d
Download	6 Jul 2010	1.17.0.0	Sorted files into sub-folders, now can read many medical-formats with ReadData3D
Download	25 Jun 2010	1.16.0.0	Fixed Dicom Sorting problem
Download	25 Jun 2010	1.15.0.0	Added Dicom Info dialog. Solved possible bugs when loading multiple files, without closing viewer3d. Added Intensity Value to mouse slice info
Download	18 Jun 2010	1.14.0.0	Solved major bugs in Dicom volume reading
Download	7 Jun 2010	1.13.0.0	Bug in "Load View" solved
Download	7 Jun 2010	1.12.0.0	Now read single Dicom files containing a whole 3D/4D volume. Fixed bug dividing by zero with empty slice in auto contrast. Added option to click landmarks, and made keyboard shortcuts for measure options.
Download	2 Jun 2010	1.11.0.0	Now "Autocontrast" is automatically enabled if someone uses uint16 and the data uses only a part of the rang 0 to 2^16-1
Download	1 Oct 2009	1.10.0.0	Linux Ubuntu tested
Download	28 Jul 2009	1.9.0.0	Removed unnecessary code from mouse position read out. Maybe this fixed the mouse position out of sync bug, which occurred sometimes.
Download	3 Apr 2009	1.8.0.0	Slice rendering and measurements, multi-threaded image warp code, bugs fixed.
Download	26 Feb 2009	1.6.0.0	Configuration screen, with trade off between quality, memory and speed. Implemented most suggestions by Cris Luengo. Some small bug fixes and optimizations.
Download	22 Nov 2008	1.5.0.0	Now 100% Matlab code, no mex files needed. Also warp 2D interpolation bug and save/load bug fixed.
Download	6 Nov 2008	1.2.0.0	fixed small dimension bug in major viewing axis. And files to folders
Download	5 Nov 2008	1.1.0.0	Extended the help (with pictures) and updated error check
Download	4 Nov 2008	1.0.0.0

Viewer3D

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MATLAB发行有限公司mpatibility

Platform Compatibility

Categories

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Acknowledgements

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Old_Viewer3D_with_c_code/

Old_Viewer3D_with_c_code/mex_c-code/

ReadData3D/

ReadData3D/dicom/

ReadData3D/gipl/

ReadData3D/hdr/

ReadData3D/isi/

ReadData3D/mha/

ReadData3D/nii/

ReadData3D/par/

ReadData3D/raw/

ReadData3D/subfunctions/

ReadData3D/v3d/

ReadData3D/vff/

ReadData3D/vmp/

ReadData3D/vtk/

ReadData3D/xif/

SubFunctions/

SubFunctions/BasicSnake_version2d/