Species object
Object containing species information
Description
The SimBiology®species object represents aspecies, which is a chemical or entity that participates in reactions, for example,DNA
,ATP
,Pi
,creatine
,G-Protein
, orMitogen-Activated Protein Kinase (MAPK)
. Species amounts can vary or remain constant during a simulation. The name of each species must be unique within the same compartment and the species object cannot have the same name as anyobservable
object in the model.
To add species that participate in reactions, add the reaction to the model. The process of adding the reaction to the model creates a compartment object (unnamed
) and the necessary species objects.
Alternatively, create and add a species object to a compartment object, using theaddspecies
method at the command line.
SeeProperty Summaryfor links to species property reference pages. Properties define the characteristics of an object. Use the
andget
commands to list object properties and change their values at the command line. You can graphically change object properties in the graphical user interface.set
Constructor Summary
addspecies (model, compartment) | Create species object and add to compartment object within model object |
Method Summary
Methods for species objects
copyobj | CopySimBiologyobject and its children |
delete | Delete SimBiology object |
display | Display summary of SimBiology object |
findUsages | Find out how a species, parameter, or compartment is used in a model |
get | Get SimBiology object properties |
move | Move SimBiology species or parameter object to new parent |
rename | Rename object and update expressions |
set | Set SimBiology object properties |
Property Summary
Properties for species objects
Active | Indicate object in use during simulation |
BoundaryCondition | Indicate species boundary condition |
Constant | Specify variable or constant species amount, parameter value, or compartment capacity |
ConstantAmount | Specify variable or constant species amount |
InitialAmount | Species initial amount |
InitialAmountUnits | Species initial amount units |
Name | 指定对象的名字 |
Notes | HTML text describingSimBiologyobject |
Parent | Indicate parent object |
Tag | Specify label forSimBiologyobject |
Type | DisplaySimBiologyobject type |
Units | Units for species amount, parameter value, compartment capacity, observable expression |
UserData | Specify data to associate with object |
Value | Value of species, compartment, or parameter object |
See Also
Compartment object
,Configset object
,KineticLaw object
,Model object
,Parameter object
,Reaction object
,Root object
,Rule object